STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100177154Aa_trans domain-containing protein. (467 aa)    
Predicted Functional Partners:
F6RT01_CIOIN
Uncharacterized protein.
      
 0.514
F6TGX2_CIOIN
Uncharacterized protein.
   
 0.508
LOC100177011
Ragulator complex protein LAMTOR2-B.
    
 0.494
LOC100181499
Uncharacterized protein LOC100181499.
    
 0.481
F6Y7F7_CIOIN
Protein YIPF.
      
 0.478
LOC100186482
Sodium-coupled neutral amino acid transporter 9-like.
      
0.475
LOC100178761
Uncharacterized protein.
      
 0.474
LOC100180665
Ras-related GTP-binding protein C.
    
 0.436
H2XX77_CIOIN
CSP domain-containing protein.
   
  
 0.403
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.