Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ci-zf(ring)-3Uncharacterized protein. (996 aa)    
Predicted Functional Partners:
LOC100182407
Protein SEC13 homolog; Belongs to the WD repeat SEC13 family.
    
 0.999
F6SPE4_CIOIN
Uncharacterized protein.
    
 0.999
F6T2X1_CIOIN
Uncharacterized protein; Belongs to the WD repeat SEC13 family.
    
 0.999
F6WK69_CIOIN
WD_REPEATS_REGION domain-containing protein.
   
0.999
LOC100183442
GATOR complex protein NPRL2-like.
    
 0.999
F6VW40_CIOIN
Zinc_ribbon_16 domain-containing protein.
    
 0.999
H2XX21_CIOIN
Uncharacterized protein.
   
 0.996
F7ARU3_CIOIN
Uncharacterized protein.
    
 0.992
F6ZLY9_CIOIN
Uncharacterized protein.
    
 0.989
LOC100175829
KICSTOR complex protein C12orf66 homolog.
    
 0.986
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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