Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC100182618Ipi1_N domain-containing protein. (745 aa)    
Predicted Functional Partners:
LOC100179576
CLP1_P domain-containing protein.
   
 0.993
LOC100183745
Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily.
   
 0.975
LOC100176561
WD_REPEATS_REGION domain-containing protein.
   
 
 0.941
LOC100187123
Uncharacterized protein.
   
   0.931
LOC100179058
Protein SDA1; Required for 60S pre-ribosomal subunits export to the cytoplasm; Belongs to the SDA1 family.
   
   0.914
LOC101242128
Uncharacterized protein.
   
  0.907
LOC100184063
Chromatin complexes subunit BAP18 isoform X4.
     
  0.900
LOC100175749
60S ribosomal protein L26.
    
 0.889
LOC100183305
60S ribosomal protein L30.
    
  0.889
rl32
Uncharacterized protein.
   
  0.888
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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