STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F6Q601_CIOINSRP54 domain-containing protein. (642 aa)    
Predicted Functional Partners:
F6VR17_CIOIN
Uncharacterized protein.
   
 0.996
SRP54
Signal recognition particle 54 kDa protein; Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein). Belongs to the GTP-binding SRP family. SRP54 subfamily.
  
0.994
LOC100182362
Signal recognition particle subunit SRP72; Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane; Belongs to the SRP72 family.
   
 0.943
F6YGD1_CIOIN
Signal recognition particle subunit SRP68; Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane; Belongs to the SRP68 family.
   
 0.938
LOC100176316
60S ribosomal protein L23a-like; Belongs to the universal ribosomal protein uL23 family.
  
 
 0.937
LOC100186763
60S ribosomal protein L5.
  
 
 0.925
LOC100177507
60S ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family.
   
 
 0.899
LOC101242128
Uncharacterized protein.
  
 
 0.883
H2Y1Y8_CIOIN
Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family.
   
 
 0.863
LOC100177118
Uncharacterized protein.
   
 
 0.861
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.