STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F6Q5V5_CIOINSpectrin beta chain; Belongs to the spectrin family. (2494 aa)    
Predicted Functional Partners:
LOC100183424
Uncharacterized protein.
   
0.971
H2Y068_CIOIN
Uncharacterized protein.
  
0.935
H2XVQ2_CIOIN
Uncharacterized protein.
     
 0.906
F6XD08_CIOIN
ANK_REP_REGION domain-containing protein.
   
 0.673
LOC100183479
Ankyrin repeat domain-containing protein 60.
   
 0.673
H2XU38_CIOIN
ANK_REP_REGION domain-containing protein.
   
 0.673
H2XYD9_CIOIN
AAA_9 domain-containing protein.
   
 0.673
H2Y3R8_CIOIN
Uncharacterized protein.
   
 0.673
LOC100175227
Coatomer subunit beta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.
    
 0.619
LOC100178974
Poly [ADP-ribose] polymerase.
   
 0.612
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.