Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
F6PKI6_CIOINCUB domain-containing protein. (236 aa)    
Predicted Functional Partners:
H2XZ57_CIOIN
Uncharacterized protein.
      
 0.643
F6UN86_CIOIN
Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. Tyr protein kinase family.
    
 0.584
gla1
Uncharacterized protein LOC780869.
    
 0.584
dsh
Dishevelled homolog.
    
 0.532
H2Y2W2_CIOIN
SSD domain-containing protein.
    
 0.523
F6U8A8_CIOIN
Vang-like protein.
    
 0.486
F6YQ66_CIOIN
CUB domain-containing protein.
  
 
  0.469
H2XRJ3_CIOIN
Protein kinase domain-containing protein.
    
 0.463
H2XUQ8_CIOIN
Uncharacterized protein.
    
 0.463
gsk
Glycogen synthase kinase Alpha/beta.
    
 0.441
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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