Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Zf(c2h2)-99Uncharacterized protein. (798 aa)    
Predicted Functional Partners:
F7BM27_CIOIN
Uncharacterized protein.
   
 
 0.943
H2XNV6_CIOIN
DUF3677 domain-containing protein.
   
   0.889
LOC100176679
Uncharacterized protein.
   
   0.705
H2XNK1_CIOIN
Uncharacterized protein.
   
   0.705
F7BN02_CIOIN
INTS5_C domain-containing protein.
   
   0.704
H2XZK3_CIOIN
INTS5_N domain-containing protein.
   
   0.704
H2XUE6_CIOIN
SSD domain-containing protein.
      
 0.514
F6XKR6_CIOIN
Uncharacterized protein.
   
  0.507
F7A9C9_CIOIN
Uncharacterized protein.
   
  0.507
H2Y213_CIOIN
Uncharacterized protein.
   
  0.507
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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