Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
F6PHB9_CIOINUncharacterized protein. (4239 aa)    
Predicted Functional Partners:
H2XS35_CIOIN
Dynein_C domain-containing protein.
 
     0.938
LOC778840
WD_REPEATS_REGION domain-containing protein.
   
 0.932
Ic1
Uncharacterized protein.
   
 0.929
LOC100184836
Uncharacterized protein.
  
  
 
0.901
H2XPC8_CIOIN
Uncharacterized protein.
  
  
 
0.901
F7A1Q2_CIOIN
Dynein_C domain-containing protein.
 
      0.810
F6VYZ5_CIOIN
WD_REPEATS_REGION domain-containing protein.
    
 0.663
F6YXX9_CIOIN
Uncharacterized protein.
    
 0.654
F6UM48_CIOIN
Uncharacterized protein.
    
   0.553
F7B690_CIOIN
CAP-Gly domain-containing protein.
   
 0.549
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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