Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
F6RCH7_CIOINUncharacterized protein. (278 aa)    
Predicted Functional Partners:
F6YNJ1_CIOIN
HATPase_c domain-containing protein.
    
 0.972
LOC100184240
Ubiquitin-conjugating enzyme E2 35-like isoform X2; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.968
LOC100177184
Ubiquitin-conjugating enzyme E2 W-like.
    
 0.967
H2XMA8_CIOIN
Uncharacterized protein.
    
 0.961
F6QS20_CIOIN
VWFA domain-containing protein.
   
 
 0.958
F6ZLD5_CIOIN
Protein kinase domain-containing protein.
    
 0.958
Q1RPY5_CIOIN
Zinc finger protein.
    
 
 0.921
LOC778651
Tyrosine-protein kinase receptor.
    
 0.907
F6Z8Y4_CIOIN
Uncharacterized protein.
   
   0.901
F6W2W8_CIOIN
Runt domain-containing protein.
    
 0.900
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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