STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F6RC16_CIOINATPase_AAA_core domain-containing protein. (397 aa)    
Predicted Functional Partners:
F6TLX8_CIOIN
Uncharacterized protein.
  
0.995
zf(an1)-3
AN1-type domain-containing protein.
    
 0.912
F6YNL7_CIOIN
Ubiquitin-like domain-containing protein.
    
 0.912
F6YHD5_CIOIN
AAA domain-containing protein; Belongs to the AAA ATPase family.
 
     0.909
F7BMH5_CIOIN
UBX domain-containing protein.
   
 0.886
LOC100180448
Peroxisomal membrane protein PEX14-like isoform X1.
    
 0.879
F7B8G2_CIOIN
TPR_REGION domain-containing protein.
   
 0.870
LOC100185991
Pex2_Pex12 domain-containing protein.
   
 0.838
H2XYD5_CIOIN
Peroxisome assembly protein 12; Required for protein import into peroxisomes. Belongs to the pex2/pex10/pex12 family.
   
 0.825
H2XZN8_CIOIN
WD_REPEATS_REGION domain-containing protein.
     
 0.796
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.