STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100185029Uncharacterized protein. (245 aa)    
Predicted Functional Partners:
F7AP11_CIOIN
Uncharacterized protein.
    
 0.997
H2XU17_CIOIN
Longin domain-containing protein.
   
 0.996
LOC100179814
Syntaxin-18.
   
 0.984
ENSCINP00000009254
Uncharacterized protein.
    
 0.926
H2XYV9_CIOIN
Uncharacterized protein.
    
 0.926
H2XQ34_CIOIN
Uncharacterized protein.
    
 0.867
LOC100184992
Golgi SNAP receptor complex member 2; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network.
   
 
 0.826
LOC100183428
Uncharacterized protein.
    
 0.802
LOC100181871
t-SNARE coiled-coil homology domain-containing protein.
    
 0.793
LOC100181776
BET1 homolog.
    
 0.789
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.