Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
F6QE47_CIOINUncharacterized protein. (433 aa)    
Predicted Functional Partners:
LOC100181977
Uncharacterized protein.
 
 
    0.893
LOC100179182
Uncharacterized protein.
   
  
 0.851
LOC100184101
Uncharacterized protein.
 
    
 0.643
F6YQR4_CIOIN
Uncharacterized protein.
   
    0.630
H2XKE3_CIOIN
Uncharacterized protein.
   
    0.608
LOC100177652
60S ribosomal protein L9.
 
 
    0.599
F6WKD5_CIOIN
R3H domain-containing protein.
      
 0.570
LOC100184693
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.
      
 0.556
LOC100182572
Bystin-like.
   
  
 0.538
LOC100179683
26S proteasome non-ATPase regulatory subunit 14.
   
 
 0.520
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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