STRINGSTRING
ENSCING00000013766 protein (Ciona intestinalis) - STRING interaction network
"ENSCING00000013766" - Uncharacterized protein in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCING00000013766Uncharacterized protein (212 aa)    
Predicted Functional Partners:
Cin.54243
Uncharacterized protein (188 aa)
 
 
  0.845
ENSCING00000006332
Uncharacterized protein (804 aa)
 
 
  0.819
gars
Uncharacterized protein (675 aa)
     
  0.769
ENSCING00000021072
Uncharacterized protein (231 aa)
   
  0.701
ENSCING00000022981
Uncharacterized protein (917 aa)
   
  0.700
ENSCING00000008651
Uncharacterized protein (709 aa)
   
  0.700
ENSCING00000002409
Uncharacterized protein ; Structure-specific nuclease with 5’-flap endonuclease and 5’-3’ exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5’-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5’-end of a downstream Okazaki fragment. It enters the flap from the 5’-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site-terminated flap. Acts [...] (380 aa)
   
  0.700
ci-htf-1
Transcription factor ; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1297 aa)
   
 
  0.676
ENSCING00000022114
Uncharacterized protein (143 aa)
     
  0.672
ENSCING00000017214
Uncharacterized protein (276 aa)
     
  0.672
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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