Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
F6Q909_CIOINUncharacterized protein. (600 aa)    
Predicted Functional Partners:
F7A8L8_CIOIN
Uncharacterized protein.
   
 0.977
LOC100181735
wiskott-Aldrich syndrome protein family member 3-like.
    
 
 0.955
H2XM43_CIOIN
SH3 domain-containing protein.
    
 
 0.944
F6Q792_CIOIN
tRNA_int_endo domain-containing protein.
    
   0.891
H2XVQ2_CIOIN
Uncharacterized protein.
   
 0.769
F6V4B3_CIOIN
Uncharacterized protein.
    
 0.762
cdc42
Uncharacterized protein.
    
 0.757
F6TIZ3_CIOIN
Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
   
 
 0.751
H2XJI6_CIOIN
SH3 domain-containing protein.
   
 
 0.751
F6ZUK5_CIOIN
Uncharacterized protein.
   
 
 0.676
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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