Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
F6Z5J1_CIOINHYR domain-containing protein. (198 aa)    
Predicted Functional Partners:
F6Z5I5_CIOIN
Ephrin_rec_like domain-containing protein.
 
 
  0.720
H2XX81_CIOIN
Ig-like domain-containing protein.
    
 0.696
LOC100175128
Ryncolin-4.
   
  0.664
F6QQU5_CIOIN
Fibrinogen C-terminal domain-containing protein.
    
  0.660
F6TM76_CIOIN
Uncharacterized protein.
    
  0.660
LOC100184383
Fibronectin.
    
  0.660
F6W430_CIOIN
Uncharacterized protein.
    
  0.660
F6TUA3_CIOIN
Fibrinogen C-terminal domain-containing protein.
    
  0.660
F6RMM4_CIOIN
Fibrinogen C-terminal domain-containing protein.
    
  0.660
LOC100184933
Uncharacterized protein LOC100184933.
    
  0.660
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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