Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC10018629839S ribosomal protein L37, mitochondrial. (473 aa)    
Predicted Functional Partners:
LOC100187432
39S ribosomal protein L11, mitochondrial-like; Belongs to the universal ribosomal protein uL11 family.
   
 
 0.984
F6TCE2_CIOIN
Ribosomal_L2 domain-containing protein.
   
   0.981
LOC100186983
Tim44 domain-containing protein.
   
 
 0.976
F6SNK4_CIOIN
Uncharacterized protein.
   
   0.965
LOC100179051
39S ribosomal protein L49, mitochondrial-like.
   
 
 0.963
LOC100179663
39S ribosomal protein L24, mitochondrial.
   
 
 0.962
LOC100187383
39S ribosomal protein L13, mitochondrial-like.
   
 
 0.960
LOC100175511
Growth arrest and DNA damage-inducible proteins-interacting protein 1-like.
   
   0.955
LOC108949611
39S ribosomal protein L47, mitochondrial-like isoform X2.
    
 
 0.954
LOC100176514
peptidyl-tRNA hydrolase ICT1, mitochondrial.
   
   0.954
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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