LOC100181968 protein (Ciona intestinalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC100181968

TP_methylase domain-containing protein. (285 aa)

Predicted Functional Partners:

F6VZF6_CIOIN

0.890

LOC100181314

0.887

F6XKZ0_CIOIN

0.719

F6XKY1_CIOIN

0.719

F6XKX5_CIOIN

0.719

LOC100176897

0.686

F6TGX7_CIOIN

0.683

F6WYJ4_CIOIN

0.676

F6WQI3_CIOIN

0.644

F6YUN5_CIOIN

0.642

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6TGX7_CIOIN	F6WQI3_CIOIN	ENSCINP00000016133	ENSCINP00000011772	Uncharacterized protein.	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	0.499
F6TGX7_CIOIN	LOC100181968	ENSCINP00000016133	ENSCINP00000018685	Uncharacterized protein.	TP_methylase domain-containing protein.	0.683
F6VZF6_CIOIN	F6WYJ4_CIOIN	ENSCINP00000015101	ENSCINP00000017752	2-(3-amino-3-carboxypropyl)histidine synthase subunit 1; Required for the first step of diphthamide biosynthesis, the transfer of 3-amino-3-carboxypropyl from S-adenosyl-L-methionine to a histidine residue. Diphthamide is a post-translational modification of histidine which occurs in elongation factor 2.	Tr-type G domain-containing protein.	0.673
F6VZF6_CIOIN	F6XKX5_CIOIN	ENSCINP00000015101	ENSCINP00000019009	2-(3-amino-3-carboxypropyl)histidine synthase subunit 1; Required for the first step of diphthamide biosynthesis, the transfer of 3-amino-3-carboxypropyl from S-adenosyl-L-methionine to a histidine residue. Diphthamide is a post-translational modification of histidine which occurs in elongation factor 2.	GTP_EFTU_D2 domain-containing protein.	0.772
F6VZF6_CIOIN	F6XKY1_CIOIN	ENSCINP00000015101	ENSCINP00000019008	2-(3-amino-3-carboxypropyl)histidine synthase subunit 1; Required for the first step of diphthamide biosynthesis, the transfer of 3-amino-3-carboxypropyl from S-adenosyl-L-methionine to a histidine residue. Diphthamide is a post-translational modification of histidine which occurs in elongation factor 2.	Tr-type G domain-containing protein.	0.772
F6VZF6_CIOIN	F6XKZ0_CIOIN	ENSCINP00000015101	ENSCINP00000019007	2-(3-amino-3-carboxypropyl)histidine synthase subunit 1; Required for the first step of diphthamide biosynthesis, the transfer of 3-amino-3-carboxypropyl from S-adenosyl-L-methionine to a histidine residue. Diphthamide is a post-translational modification of histidine which occurs in elongation factor 2.	EFG_C domain-containing protein.	0.772
F6VZF6_CIOIN	F6YUN5_CIOIN	ENSCINP00000015101	ENSCINP00000002165	2-(3-amino-3-carboxypropyl)histidine synthase subunit 1; Required for the first step of diphthamide biosynthesis, the transfer of 3-amino-3-carboxypropyl from S-adenosyl-L-methionine to a histidine residue. Diphthamide is a post-translational modification of histidine which occurs in elongation factor 2.	WD_REPEATS_REGION domain-containing protein.	0.642
F6VZF6_CIOIN	LOC100181314	ENSCINP00000015101	ENSCINP00000033339	2-(3-amino-3-carboxypropyl)histidine synthase subunit 1; Required for the first step of diphthamide biosynthesis, the transfer of 3-amino-3-carboxypropyl from S-adenosyl-L-methionine to a histidine residue. Diphthamide is a post-translational modification of histidine which occurs in elongation factor 2.	2-(3-amino-3-carboxypropyl)histidine synthase subunit 2.	0.991
F6VZF6_CIOIN	LOC100181968	ENSCINP00000015101	ENSCINP00000018685	2-(3-amino-3-carboxypropyl)histidine synthase subunit 1; Required for the first step of diphthamide biosynthesis, the transfer of 3-amino-3-carboxypropyl from S-adenosyl-L-methionine to a histidine residue. Diphthamide is a post-translational modification of histidine which occurs in elongation factor 2.	TP_methylase domain-containing protein.	0.890
F6WQI3_CIOIN	F6TGX7_CIOIN	ENSCINP00000011772	ENSCINP00000016133	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	Uncharacterized protein.	0.499
F6WQI3_CIOIN	F6WYJ4_CIOIN	ENSCINP00000011772	ENSCINP00000017752	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	Tr-type G domain-containing protein.	0.756
F6WQI3_CIOIN	F6XKX5_CIOIN	ENSCINP00000011772	ENSCINP00000019009	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	GTP_EFTU_D2 domain-containing protein.	0.756
F6WQI3_CIOIN	F6XKY1_CIOIN	ENSCINP00000011772	ENSCINP00000019008	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	Tr-type G domain-containing protein.	0.756
F6WQI3_CIOIN	F6XKZ0_CIOIN	ENSCINP00000011772	ENSCINP00000019007	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	EFG_C domain-containing protein.	0.756
F6WQI3_CIOIN	LOC100176897	ENSCINP00000011772	ENSCINP00000011812	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	Uncharacterized protein.	0.476
F6WQI3_CIOIN	LOC100181968	ENSCINP00000011772	ENSCINP00000018685	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	TP_methylase domain-containing protein.	0.644
F6WYJ4_CIOIN	F6VZF6_CIOIN	ENSCINP00000017752	ENSCINP00000015101	Tr-type G domain-containing protein.	2-(3-amino-3-carboxypropyl)histidine synthase subunit 1; Required for the first step of diphthamide biosynthesis, the transfer of 3-amino-3-carboxypropyl from S-adenosyl-L-methionine to a histidine residue. Diphthamide is a post-translational modification of histidine which occurs in elongation factor 2.	0.673
F6WYJ4_CIOIN	F6WQI3_CIOIN	ENSCINP00000017752	ENSCINP00000011772	Tr-type G domain-containing protein.	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	0.756
F6WYJ4_CIOIN	F6XKX5_CIOIN	ENSCINP00000017752	ENSCINP00000019009	Tr-type G domain-containing protein.	GTP_EFTU_D2 domain-containing protein.	0.900
F6WYJ4_CIOIN	F6XKZ0_CIOIN	ENSCINP00000017752	ENSCINP00000019007	Tr-type G domain-containing protein.	EFG_C domain-containing protein.	0.920