STRINGSTRING
LOC494419 protein (Ciona intestinalis) - STRING interaction network
"LOC494419" - Zinc finger protein 183 in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC494419Zinc finger protein 183 (325 aa)    
Predicted Functional Partners:
prpf19
Uncharacterized protein (437 aa)
     
 
  0.971
ENSCING00000007995
Uncharacterized protein (779 aa)
     
 
  0.963
ENSCING00000001601
Uncharacterized protein (144 aa)
     
      0.931
cdc40
Uncharacterized protein (504 aa)
       
      0.872
ENSCING00000004226
Ubiquitin carboxyl-terminal hydrolase (1099 aa)
     
      0.682
ENSCING00000018880
Uncharacterized protein (501 aa)
       
      0.679
ENSCING00000014884
Uncharacterized protein (311 aa)
       
      0.679
ENSCING00000003236
Uncharacterized protein (438 aa)
       
      0.679
ENSCING00000006692
Uncharacterized protein (488 aa)
     
 
  0.535
ENSCING00000005665
Uncharacterized protein (626 aa)
     
 
  0.525
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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