STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC494419Zinc finger protein 183. (325 aa)    
Predicted Functional Partners:
F6W453_CIOIN
Uncharacterized protein.
    
 
 0.990
LOC100176960
Uncharacterized protein.
   
 
 0.988
F6RKQ2_CIOIN
Uncharacterized protein.
    
   0.977
F6VHI4_CIOIN
PPIase cyclophilin-type domain-containing protein.
    
 0.972
F6R2U8_CIOIN
MI domain-containing protein.
    
 0.965
F6QVH1_CIOIN
Uncharacterized protein.
    
 0.958
F6Y1N2_CIOIN
PSP domain-containing protein.
    
 
 0.936
F6W8G0_CIOIN
WD_REPEATS_REGION domain-containing protein.
    
 0.933
LOC100184101
Uncharacterized protein.
   
 
 0.926
zf(matrin)-2
Zinc finger protein.
    
 
 0.911
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.