Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC494419Zinc finger protein 183. (325 aa)    
Predicted Functional Partners:
LOC100176960
Uncharacterized protein.
   
 
 0.976
F6VHI4_CIOIN
PPIase cyclophilin-type domain-containing protein.
    
 0.974
F6R2U8_CIOIN
MI domain-containing protein.
    
 0.966
F6Y1N2_CIOIN
PSP domain-containing protein.
    
 
 0.961
F6QVH1_CIOIN
Uncharacterized protein.
    
 0.959
F6W453_CIOIN
Uncharacterized protein.
    
 
 0.942
F6W8G0_CIOIN
WD_REPEATS_REGION domain-containing protein.
    
 0.941
F6TFJ1_CIOIN
Uncharacterized protein.
    
  0.930
LOC100184101
Uncharacterized protein.
    
 
 0.898
LOC100177488
Protein BUD31 homolog.
    
 
 0.895
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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