STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F6W213_CIOINUncharacterized protein. (572 aa)    
Predicted Functional Partners:
F6QNL7_CIOIN
Uncharacterized protein.
 
 0.957
F6PHE6_CIOIN
Uncharacterized protein.
   
 0.953
H2XVM9_CIOIN
Uncharacterized protein.
   
 0.952
F6UK15_CIOIN
SWIB domain-containing protein.
   
 0.951
F6XT34_CIOIN
HMG box domain-containing protein.
   
 0.945
F6U2A4_CIOIN
BAF250_C domain-containing protein.
   
 0.941
LOC100185398
Actin-like protein 6B; Belongs to the actin family.
    
 0.941
F6WMT5_CIOIN
HSA domain-containing protein.
 
   
  0.933
H2Y0G6_CIOIN
Uncharacterized protein.
 
 
 0.930
H2XU02_CIOIN
Uncharacterized protein.
 
 
 0.872
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.