LOC100181350 protein (Ciona intestinalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC100181350

Uncharacterized protein. (1356 aa)

Predicted Functional Partners:

F6Z6J2_CIOIN

0.952

LOC100181207

0.912

F6U0U0_CIOIN

0.905

H2XZF5_CIOIN

0.905

LOC100186031

0.904

F6V519_CIOIN

0.901

H2XKW0_CIOIN

0.900

LOC100178002

0.838

LOC100181703

0.531

F7ASW5_CIOIN

0.531

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6U0U0_CIOIN	F6V519_CIOIN	ENSCINP00000025606	ENSCINP00000012380	Uncharacterized protein.	Uncharacterized protein.	0.905
F6U0U0_CIOIN	H2XZF5_CIOIN	ENSCINP00000025606	ENSCINP00000035039	Uncharacterized protein.	Uncharacterized protein.	0.908
F6U0U0_CIOIN	LOC100181207	ENSCINP00000025606	ENSCINP00000031513	Uncharacterized protein.	FAD-binding PCMH-type domain-containing protein.	0.903
F6U0U0_CIOIN	LOC100181350	ENSCINP00000025606	ENSCINP00000018790	Uncharacterized protein.	Uncharacterized protein.	0.905
F6V519_CIOIN	F6U0U0_CIOIN	ENSCINP00000012380	ENSCINP00000025606	Uncharacterized protein.	Uncharacterized protein.	0.905
F6V519_CIOIN	F6Z6J2_CIOIN	ENSCINP00000012380	ENSCINP00000016539	Uncharacterized protein.	Purine nucleoside phosphorylase; The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate.	0.952
F6V519_CIOIN	F7ASW5_CIOIN	ENSCINP00000012380	ENSCINP00000023620	Uncharacterized protein.	PALP domain-containing protein.	0.531
F6V519_CIOIN	H2XKW0_CIOIN	ENSCINP00000012380	ENSCINP00000030292	Uncharacterized protein.	Uncharacterized protein.	0.900
F6V519_CIOIN	H2XZF5_CIOIN	ENSCINP00000012380	ENSCINP00000035039	Uncharacterized protein.	Uncharacterized protein.	0.905
F6V519_CIOIN	LOC100178002	ENSCINP00000012380	ENSCINP00000035730	Uncharacterized protein.	Cytochrome b5 heme-binding domain-containing protein; Belongs to the cytochrome b5 family.	0.838
F6V519_CIOIN	LOC100181207	ENSCINP00000012380	ENSCINP00000031513	Uncharacterized protein.	FAD-binding PCMH-type domain-containing protein.	0.915
F6V519_CIOIN	LOC100181350	ENSCINP00000012380	ENSCINP00000018790	Uncharacterized protein.	Uncharacterized protein.	0.901
F6V519_CIOIN	LOC100181703	ENSCINP00000012380	ENSCINP00000018994	Uncharacterized protein.	Probable imidazolonepropionase.	0.531
F6V519_CIOIN	LOC100186031	ENSCINP00000012380	ENSCINP00000035369	Uncharacterized protein.	Adenine phosphoribosyltransferase-like.	0.904
F6Z6J2_CIOIN	F6V519_CIOIN	ENSCINP00000016539	ENSCINP00000012380	Purine nucleoside phosphorylase; The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate.	Uncharacterized protein.	0.952
F6Z6J2_CIOIN	F7ASW5_CIOIN	ENSCINP00000016539	ENSCINP00000023620	Purine nucleoside phosphorylase; The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate.	PALP domain-containing protein.	0.659
F6Z6J2_CIOIN	H2XKW0_CIOIN	ENSCINP00000016539	ENSCINP00000030292	Purine nucleoside phosphorylase; The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate.	Uncharacterized protein.	0.916
F6Z6J2_CIOIN	LOC100181207	ENSCINP00000016539	ENSCINP00000031513	Purine nucleoside phosphorylase; The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate.	FAD-binding PCMH-type domain-containing protein.	0.950
F6Z6J2_CIOIN	LOC100181350	ENSCINP00000016539	ENSCINP00000018790	Purine nucleoside phosphorylase; The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate.	Uncharacterized protein.	0.952
F6Z6J2_CIOIN	LOC100181703	ENSCINP00000016539	ENSCINP00000018994	Purine nucleoside phosphorylase; The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate.	Probable imidazolonepropionase.	0.659