Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
F6SNY7_CIOINFlavin-containing monooxygenase. (400 aa)    
Predicted Functional Partners:
gad
Uncharacterized protein.
   
 
 0.904
csd
Cysteine sulfinic acid decarboxylase.
   
 
 0.904
LOC100177413
Acidic amino acid decarboxylase GADL1 isoform X4.
   
 
 0.904
F6VDG2_CIOIN
Bile_Hydr_Trans domain-containing protein.
     
  0.900
F6VDF0_CIOIN
Bile_Hydr_Trans domain-containing protein.
   
 
  0.900
F6Q8D1_CIOIN
Uncharacterized protein.
  
 
  0.654
F7A2U0_CIOIN
Uncharacterized protein.
  
 
  0.654
LOC100182976
Glutathione hydrolase 1 proenzyme isoform X2.
  
 
  0.654
F6V828_CIOIN
Uncharacterized protein.
  
 
  0.654
F6XP62_CIOIN
Uncharacterized protein.
  
 
  0.654
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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