Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
F7BA51_CIOINUBX domain-containing protein. (269 aa)    
Predicted Functional Partners:
LOC100187157
Uncharacterized protein; Belongs to the AAA ATPase family.
   
 0.998
LOC100186306
UBX domain-containing protein.
    
 0.998
F7ANZ8_CIOIN
Uncharacterized protein.
     
0.969
F6SW03_CIOIN
Uncharacterized protein.
    
 0.959
F6YV51_CIOIN
U-box domain-containing protein.
    
 
 0.941
Zf(c2h2)-80
Uncharacterized protein.
    
   0.720
H2XR59_CIOIN
Uncharacterized protein.
    
 
 0.700
LOC100176662
U-box domain-containing protein.
    
 
 0.670
F6YHT4_CIOIN
AAA domain-containing protein; Belongs to the AAA ATPase family.
   
 
 0.667
F6YHD5_CIOIN
AAA domain-containing protein; Belongs to the AAA ATPase family.
   
 
 0.667
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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