Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
F7B9N2_CIOINUncharacterized protein. (859 aa)    
Predicted Functional Partners:
F6V7V1_CIOIN
Uncharacterized protein.
   
 
 0.925
F6WHH4_CIOIN
BRCT domain-containing protein.
   
 
 0.925
H2XS48_CIOIN
TROVE domain-containing protein.
    
 
 0.703
H2Y3R0_CIOIN
Uncharacterized protein.
    
 
 0.703
zf(ring)-30
Zinc finger protein.
    
   0.699
LOC100176941
Elongation factor 1-beta-like; Belongs to the EF-1-beta/EF-1-delta family.
      
 0.575
F6Z3D0_CIOIN
Uncharacterized protein; Belongs to the peptidase C1 family.
      
 0.561
LOC100185019
Solute carrier family 35 member B1 isoform X1.
      
 0.517
H2XN44_CIOIN
Uncharacterized protein.
    
 
 0.509
H2XTD8_CIOIN
ECSIT_Cterm domain-containing protein.
      
 0.508
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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