STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Fgf8/17/18Uncharacterized protein; Belongs to the heparin-binding growth factors family. (414 aa)    
Predicted Functional Partners:
Fgf9/16/20
Fibroblast growth factor; Belongs to the heparin-binding growth factors family.
  
 
 0.946
fgf4/5/6
Fibroblast growth factor; Belongs to the heparin-binding growth factors family.
  
  
 0.795
F6ZFT6_CIOIN
Uncharacterized protein.
      
 0.720
fgf3/7/10/22
Fibroblast growth factor 3/7/10/22; Belongs to the heparin-binding growth factors family.
  
 
 0.714
Fgf11/12/13/14
Fibroblast growth factor; Belongs to the heparin-binding growth factors family.
  
   
 0.691
msxb
Homeobox domain-containing protein.
     
 0.664
fgfr
Fibroblast growth factor receptor; Receptor for basic fibroblast growth factor.
    
 0.656
Tgfbeta2
TGF_BETA_2 domain-containing protein.
      
 0.644
LOC100182493
Growth factor receptor-bound protein 2-like isoform X1.
    
 0.619
LOC100183719
Uncharacterized protein.
    
 0.619
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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