STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F6ZN89_CIOINUncharacterized protein; Belongs to the SNF2/RAD54 helicase family. SMARCAL1 subfamily. (627 aa)    
Predicted Functional Partners:
H2XVZ6_CIOIN
Uncharacterized protein.
    
 
 0.961
LOC113474468
Replication protein A 14 kDa subunit-like.
    
 0.903
LOC100182514
Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage.
    
 0.894
LOC100179683
26S proteasome non-ATPase regulatory subunit 14.
 
  
  0.892
H2Y379_CIOIN
RPA_C domain-containing protein.
   
 0.788
LOC100179894
Werner syndrome ATP-dependent helicase homolog isoform X1.
  
 
 0.678
H2XKT2_CIOIN
3'-5' exonuclease domain-containing protein.
  
 
 0.678
F6QXW9_CIOIN
Helicase ATP-binding domain-containing protein.
   
 0.659
F6UAB2_CIOIN
FANCM-MHF_bd domain-containing protein.
   
 0.659
H2XN42_CIOIN
Uncharacterized protein.
   
 0.659
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
Server load: low (30%) [HD]