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The next version of STRING is ready for use in your analyses: updated networks across STRING newly available directed regulatory networks a new typed view showing functional, physical, and regulatory edges in one network new clustering options and cluster-based layouts … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F6WBK6_CIOINTPR_REGION domain-containing protein. (446 aa)    
Predicted Functional Partners:
F6ZZ65_CIOIN
Uncharacterized protein.
   
 0.982
LOC100181654
PHTB1_N domain-containing protein.
   
 0.978
F6Y677_CIOIN
Uncharacterized protein.
  
0.975
LOC100184123
Bardet-Biedl syndrome 2 protein homolog.
   
 0.970
F6YHN3_CIOIN
Uncharacterized protein.
    
 0.966
LOC100178020
Bardet-Biedl syndrome 5 protein.
    
 0.870
LOC100175568
BTB domain-containing protein.
    
 0.870
LOC494392
Uncharacterized protein LOC494392.
    
 0.864
LOC100181439
Leucine zipper transcription factor-like protein 1.
   
 0.807
H2XNX7_CIOIN
PCM1_C domain-containing protein.
   
 
 0.751
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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