Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC10018634560S ribosomal protein L7a. (268 aa)    
Predicted Functional Partners:
LOC100175959
60S acidic ribosomal protein P2; Belongs to the eukaryotic ribosomal protein P1/P2 family.
   
 0.999
LOC100186361
60S ribosomal protein L6.
  
 0.999
LOC100181568
Ribosomal protein; Belongs to the universal ribosomal protein uL1 family.
  
 0.999
LOC100181712
40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.
  
 0.999
LOC100184047
60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family.
   
 0.999
LOC100177507
60S ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family.
  
 0.999
LOC100175749
60S ribosomal protein L26.
  
 0.999
F6XBT4_CIOIN
Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.
   
 0.999
LOC100185384
ubiquitin-60S ribosomal protein L40.
   
 0.999
LOC100183027
40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family.
   
 0.999
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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