STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100180278Uncharacterized protein LOC100180278. (358 aa)    
Predicted Functional Partners:
LOC100181412
Uncharacterized protein LOC100181412.
 
 0.759
F6SAH8_CIOIN
Uncharacterized protein.
  
 
 0.688
LOC100186144
Fe-ADH domain-containing protein.
  
 
 0.646
LOC100179233
2-amino-3-ketobutyrate coenzyme A ligase, mitochondrial-like.
 
 
 0.605
F7B6S8_CIOIN
Uncharacterized protein.
  
 
 0.576
H2XLN7_CIOIN
Uncharacterized protein.
  
 0.572
H2XQD5_CIOIN
Aminotran_1_2 domain-containing protein.
 
 
 0.553
F6XUD5_CIOIN
Aminotran_1_2 domain-containing protein.
  
 
 0.550
F6V9F0_CIOIN
Aminotran_1_2 domain-containing protein.
  
 
 0.549
H2XVK2_CIOIN
Aminotran_1_2 domain-containing protein.
 
 
 0.549
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.