STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100187168ULP_PROTEASE domain-containing protein. (709 aa)    
Predicted Functional Partners:
F6YEG0_CIOIN
Peptidase_M3 domain-containing protein.
   
 
 0.767
H2XY06_CIOIN
Uncharacterized protein.
   
  
 0.642
LOC100184420
Uncharacterized protein.
  
  
 0.630
F6RA92_CIOIN
Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family.
      
 0.609
F6SLT5_CIOIN
Aminopeptidase.
     
 0.602
F6U315_CIOIN
Peptidase_S9 domain-containing protein.
   
 
 0.559
H2XQ42_CIOIN
Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.
   
  
 0.550
LOC100176014
AMP_N domain-containing protein.
   
 
 0.547
F7B1Q5_CIOIN
Leishmanolysin-like peptidase.
   
  
 0.539
LOC100183092
Aminopeptidase.
     
 0.520
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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