STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F6Y9F6_CIOINBRO1 domain-containing protein. (336 aa)    
Predicted Functional Partners:
LOC100182764
Charged multivesicular body protein 5.
    
 0.717
LOC100185572
Charged multivesicular body protein 4b-like isoform X1.
   
 0.579
F6W8M0_CIOIN
Transmembrane 9 superfamily member; Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family.
    
 0.546
LOC100180662
Charged multivesicular body protein 6-B-like.
    
 0.500
LOC100181387
Magnesium-dependent phosphatase 1-like.
    
 0.490
LOC104265386
Uncharacterized protein.
    
 0.483
F6PHZ4_CIOIN
Uncharacterized protein.
   
 
 0.464
LOC100176778
Coiled-coil domain-containing protein 25.
 
      0.412
H2Y2N2_CIOIN
MPN domain-containing protein.
    
 
 0.408
LOC100180144
Vacuolar protein sorting-associated protein 4B-like; Belongs to the AAA ATPase family.
    
 0.406
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.