STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F6Y901_CIOINUncharacterized protein. (622 aa)    
Predicted Functional Partners:
F6XBY1_CIOIN
ACB domain-containing protein.
  
 0.792
F6WQJ7_CIOIN
Uncharacterized protein.
  
 0.792
F7A8X9_CIOIN
Uncharacterized protein.
  
 0.792
H2XMN5_CIOIN
Uncharacterized protein.
  
 0.792
H2Y1K1_CIOIN
ACB domain-containing protein.
  
 0.792
F6WKB8_CIOIN
CIA30 domain-containing protein.
   
 0.763
H2XTD8_CIOIN
ECSIT_Cterm domain-containing protein.
   
 0.755
F6RJV3_CIOIN
ETF domain-containing protein.
  
 0.712
LOC100187496
Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial-like.
  
 0.707
LOC100181032
SCP2 domain-containing protein.
  
 0.686
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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