STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F6Y8H4_CIOINAAA domain-containing protein; Belongs to the AAA ATPase family. (670 aa)    
Predicted Functional Partners:
H2XN49_CIOIN
Uncharacterized protein.
   
 
 0.923
F7AHK4_CIOIN
AAA domain-containing protein.
  
 
0.913
F7BAT7_CIOIN
Prohibitin.
   
 0.877
F6XRG3_CIOIN
Prohibitin.
   
 0.845
LOC100186033
Uncharacterized protein.
  
 0.783
F7APG8_CIOIN
Uncharacterized protein.
  
 
 0.734
F6U5W6_CIOIN
Uncharacterized protein.
 
  
 0.710
F6UBT3_CIOIN
Uncharacterized protein; Belongs to the peptidase M16 family.
  
 0.703
F6VAX6_CIOIN
Uncharacterized protein.
    
 0.686
F6UET6_CIOIN
Delta-1-pyrroline-5-carboxylate synthase; In the C-terminal section; belongs to the gamma-glutamyl phosphate reductase family.
     
 0.681
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.