Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
F6XJ18_CIOINOTU domain-containing protein. (292 aa)    
Predicted Functional Partners:
LOC100176909
Ubiquitin carboxyl-terminal hydrolase 10-like; Belongs to the peptidase C19 family.
   
 
 0.570
F6U8W0_CIOIN
OTU domain-containing protein.
    
 
 0.524
F7A912_CIOIN
Uncharacterized protein; Belongs to the peptidase C19 family.
      
 0.499
LOC100178793
OTU domain-containing protein.
      
 0.495
Zf(ubp)-1
Ubiquitin carboxyl-terminal hydrolase.
      
 0.493
F6Q4K7_CIOIN
40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.
   
   0.487
F6YGJ7_CIOIN
Uncharacterized protein; Belongs to the peptidase C19 family.
   
 
 0.479
F6YIX5_CIOIN
Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.
   
  
 0.474
F6TTI3_CIOIN
Ubiquitin carboxyl-terminal hydrolase.
   
  
 0.463
F6YVN9_CIOIN
Ubiquitin carboxyl-terminal hydrolase.
   
 
 0.462
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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