F6SXS9_CIOIN protein (Ciona intestinalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

F6SXS9_CIOIN

Uncharacterized protein. (227 aa)

Predicted Functional Partners:

LOC100180490

0.895

H2XNI7_CIOIN

0.895

F6X4N7_CIOIN

0.658

L7N0T0_CIOIN

0.657

H2XRT6_CIOIN

0.543

LOC100175761

0.509

F7BKM3_CIOIN

0.456

zf(an1)-3

0.438

F6YNL7_CIOIN

0.438

NADH4

0.428

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6SXS9_CIOIN	F6X4N7_CIOIN	ENSCINP00000019484	ENSCINP00000027923	Uncharacterized protein.	Serine/threonine-protein phosphatase.	0.658
F6SXS9_CIOIN	F6YNL7_CIOIN	ENSCINP00000019484	ENSCINP00000023412	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.438
F6SXS9_CIOIN	F7BKM3_CIOIN	ENSCINP00000019484	ENSCINP00000024722	Uncharacterized protein.	Uncharacterized protein.	0.456
F6SXS9_CIOIN	H2XNI7_CIOIN	ENSCINP00000019484	ENSCINP00000031220	Uncharacterized protein.	JmjC domain-containing protein.	0.895
F6SXS9_CIOIN	H2XRT6_CIOIN	ENSCINP00000019484	ENSCINP00000032370	Uncharacterized protein.	Uncharacterized protein.	0.543
F6SXS9_CIOIN	L7N0T0_CIOIN	ENSCINP00000019484	ENSCINP00000013829	Uncharacterized protein.	RanBD1 domain-containing protein.	0.657
F6SXS9_CIOIN	LOC100175761	ENSCINP00000019484	ENSCINP00000031549	Uncharacterized protein.	Probable E3 ubiquitin-protein ligase HERC4.	0.509
F6SXS9_CIOIN	LOC100180490	ENSCINP00000019484	ENSCINP00000021633	Uncharacterized protein.	jmjC domain-containing protein 7.	0.895
F6SXS9_CIOIN	NADH4	ENSCINP00000019484	ENSCINP00000036597	Uncharacterized protein.	NADH-ubiquinone oxidoreductase chain 4; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	0.428
F6SXS9_CIOIN	zf(an1)-3	ENSCINP00000019484	ENSCINP00000009735	Uncharacterized protein.	AN1-type domain-containing protein.	0.438
F6X4N7_CIOIN	F6SXS9_CIOIN	ENSCINP00000027923	ENSCINP00000019484	Serine/threonine-protein phosphatase.	Uncharacterized protein.	0.658
F6YNL7_CIOIN	F6SXS9_CIOIN	ENSCINP00000023412	ENSCINP00000019484	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.438
F6YNL7_CIOIN	F7BKM3_CIOIN	ENSCINP00000023412	ENSCINP00000024722	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.846
F6YNL7_CIOIN	LOC100175761	ENSCINP00000023412	ENSCINP00000031549	Ubiquitin-like domain-containing protein.	Probable E3 ubiquitin-protein ligase HERC4.	0.526
F6YNL7_CIOIN	zf(an1)-3	ENSCINP00000023412	ENSCINP00000009735	Ubiquitin-like domain-containing protein.	AN1-type domain-containing protein.	0.672
F7BKM3_CIOIN	F6SXS9_CIOIN	ENSCINP00000024722	ENSCINP00000019484	Uncharacterized protein.	Uncharacterized protein.	0.456
F7BKM3_CIOIN	F6YNL7_CIOIN	ENSCINP00000024722	ENSCINP00000023412	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.846
F7BKM3_CIOIN	zf(an1)-3	ENSCINP00000024722	ENSCINP00000009735	Uncharacterized protein.	AN1-type domain-containing protein.	0.846
H2XNI7_CIOIN	F6SXS9_CIOIN	ENSCINP00000031220	ENSCINP00000019484	JmjC domain-containing protein.	Uncharacterized protein.	0.895
H2XRT6_CIOIN	F6SXS9_CIOIN	ENSCINP00000032370	ENSCINP00000019484	Uncharacterized protein.	Uncharacterized protein.	0.543