STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F6SXQ6_CIOINUncharacterized protein. (1041 aa)    
Predicted Functional Partners:
Ic4
Uncharacterized protein.
    
 
 0.783
LOC100179722
Uncharacterized protein.
   
 
 0.764
calx
Calaxin.
  
 
 0.761
LOC100182799
Uncharacterized protein.
   
 
 0.658
ic5
DC2-related axonemal dynein intermediate chain 5.
   
 
 0.655
ciaxp66.0
Uncharacterized protein.
   
 
 0.655
pf-rib
Protofilament ribbon protein.
   
 
 0.617
LOC100182997
33 kDa inner dynein arm light chain, axonemal.
   
 
 0.611
LOC100177695
Uncharacterized protein.
   
 
 0.606
tektinB1
Tektin B1.
   
 
 0.563
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.