STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F7ACB9_CIOINCaMBD domain-containing protein. (582 aa)    
Predicted Functional Partners:
F7B826_CIOIN
Uncharacterized protein.
      
 0.838
F6QI54_CIOIN
Uncharacterized protein.
   
  
 0.831
F6YG13_CIOIN
Uncharacterized protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family.
   
  
 0.695
atbf
Transcription factor protein.
      
 0.673
LOC100177214
Uncharacterized protein.
      
 0.660
F6VSQ8_CIOIN
Med12 domain-containing protein.
      
 0.660
LOC100184552
Uncharacterized protein; Belongs to the calmodulin family.
    
 
 0.619
LOC494376
Calmodulin-like.
    
 
 0.619
Cam
Calmodulin; Calmodulin mediates the control of a large number of enzymes, ion channels and other proteins by Ca(2+). Among the enzymes to be stimulated by the calmodulin-Ca(2+) complex are a number of protein kinases and phosphatases.
    
 
 0.619
F6T2A6_CIOIN
Uncharacterized protein; Belongs to the calmodulin family.
    
 
 0.619
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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