STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F7ACB9_CIOINCaMBD domain-containing protein. (582 aa)    
Predicted Functional Partners:
Erm/er81
ETS domain-containing protein.
   
  
 0.676
F6VYY7_CIOIN
Uncharacterized protein.
   
  
 0.671
F6VSQ8_CIOIN
Med12 domain-containing protein.
      
 0.642
F7B826_CIOIN
Uncharacterized protein.
      
 0.642
F6W2W8_CIOIN
Runt domain-containing protein.
      
 0.639
LOC100177214
Uncharacterized protein.
      
 0.637
F6YG13_CIOIN
Uncharacterized protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family.
   
  
 0.634
F6TPD4_CIOIN
Uncharacterized protein.
      
 0.559
F7BFE1_CIOIN
G_PROTEIN_RECEP_F3_4 domain-containing protein.
   
  
 0.552
Nr1
Uncharacterized protein.
      
 0.536
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.