Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
F6Y677_CIOINUncharacterized protein. (502 aa)    
Predicted Functional Partners:
F6YHN3_CIOIN
Uncharacterized protein.
  
 0.999
F6ZZ65_CIOIN
Uncharacterized protein.
   
 0.999
LOC100184123
Bardet-Biedl syndrome 2 protein homolog.
  
 
 0.999
LOC100181654
PHTB1_N domain-containing protein.
  
 
 0.999
LOC100178020
Bardet-Biedl syndrome 5 protein.
  
 
 0.994
F6WBK6_CIOIN
TPR_REGION domain-containing protein.
    
 0.992
LOC100181439
Leucine zipper transcription factor-like protein 1.
    
 0.990
LOC100175568
BTB domain-containing protein.
    
 0.931
F6TBE2_CIOIN
Uncharacterized protein.
      
 0.808
H2XPG0_CIOIN
Uncharacterized protein.
   
 0.761
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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