STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100183890Leucine-rich repeat transmembrane neuronal protein 1-like. (380 aa)    
Predicted Functional Partners:
LOC100178267
E3 ubiquitin-protein ligase PPP1R11-like.
   
 
 0.624
LOC100178900
E3 ubiquitin-protein ligase PPP1R11-like.
   
 
 0.624
F7A0P0_CIOIN
Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.
    
 
 0.590
F6VI59_CIOIN
SER_THR_PHOSPHATASE domain-containing protein.
   
 0.578
F6Q5E4_CIOIN
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
   
 0.564
mech2
Mech2 protein.
   
 0.564
LOC100178587
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
   
 0.564
H2XJI0_CIOIN
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
   
 0.564
F6SW03_CIOIN
Uncharacterized protein.
   
 
 0.563
F6ZSD7_CIOIN
Uncharacterized protein.
    
   0.489
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.