STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100184403Uncharacterized protein. (237 aa)    
Predicted Functional Partners:
F6TAD8_CIOIN
CBF domain-containing protein.
   
 0.999
LOC100178413
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
  
 0.999
LOC100180269
Uncharacterized protein.
   
 0.999
F6U609_CIOIN
Nop domain-containing protein.
   
 0.997
H2XQ81_CIOIN
PINc domain-containing protein.
   
 0.997
LOC100183259
Uncharacterized protein.
   
 0.996
LOC100184042
Uncharacterized protein.
   
 0.996
LOC100182572
Bystin-like.
   
 
 0.995
LOC100180054
U3 small nucleolar RNA-associated protein 4 homolog.
   
 0.995
H2XWG7_CIOIN
U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.
   
 0.994
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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