F6PIT9_CIOIN protein (Ciona intestinalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

F6PIT9_CIOIN

Uncharacterized protein. (210 aa)

Predicted Functional Partners:

LOC100182403

0.660

LOC100182351

0.629

F6TCY4_CIOIN

0.629

LOC100179396

0.535

H2XLM3_CIOIN

0.535

H2XWS8_CIOIN

0.519

F6SKU8_CIOIN

0.518

F6PW14_CIOIN

0.511

F6PKX9_CIOIN

0.511

F7BHT5_CIOIN

0.511

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6PIT9_CIOIN	F6PKX9_CIOIN	ENSCINP00000020211	ENSCINP00000006259	Uncharacterized protein.	SERPIN domain-containing protein; Belongs to the serpin family.	0.511
F6PIT9_CIOIN	F6PW14_CIOIN	ENSCINP00000020211	ENSCINP00000001388	Uncharacterized protein.	SERPIN domain-containing protein; Belongs to the serpin family.	0.511
F6PIT9_CIOIN	F6SKU8_CIOIN	ENSCINP00000020211	ENSCINP00000010614	Uncharacterized protein.	Uncharacterized protein.	0.518
F6PIT9_CIOIN	F6TCY4_CIOIN	ENSCINP00000020211	ENSCINP00000025654	Uncharacterized protein.	Kringle domain-containing protein.	0.629
F6PIT9_CIOIN	F7BHT5_CIOIN	ENSCINP00000020211	ENSCINP00000026396	Uncharacterized protein.	SERPIN domain-containing protein; Belongs to the serpin family.	0.511
F6PIT9_CIOIN	H2XLM3_CIOIN	ENSCINP00000020211	ENSCINP00000030555	Uncharacterized protein.	Uncharacterized protein.	0.535
F6PIT9_CIOIN	H2XWS8_CIOIN	ENSCINP00000020211	ENSCINP00000034112	Uncharacterized protein.	Uncharacterized protein.	0.519
F6PIT9_CIOIN	LOC100179396	ENSCINP00000020211	ENSCINP00000006408	Uncharacterized protein.	Integrin beta.	0.535
F6PIT9_CIOIN	LOC100182351	ENSCINP00000020211	ENSCINP00000004457	Uncharacterized protein.	Plasminogen-like; Belongs to the peptidase S1 family.	0.629
F6PIT9_CIOIN	LOC100182403	ENSCINP00000020211	ENSCINP00000001591	Uncharacterized protein.	Integrin_alpha2 domain-containing protein; Belongs to the integrin alpha chain family.	0.660
F6PKX9_CIOIN	F6PIT9_CIOIN	ENSCINP00000006259	ENSCINP00000020211	SERPIN domain-containing protein; Belongs to the serpin family.	Uncharacterized protein.	0.511
F6PW14_CIOIN	F6PIT9_CIOIN	ENSCINP00000001388	ENSCINP00000020211	SERPIN domain-containing protein; Belongs to the serpin family.	Uncharacterized protein.	0.511
F6SKU8_CIOIN	F6PIT9_CIOIN	ENSCINP00000010614	ENSCINP00000020211	Uncharacterized protein.	Uncharacterized protein.	0.518
F6TCY4_CIOIN	F6PIT9_CIOIN	ENSCINP00000025654	ENSCINP00000020211	Kringle domain-containing protein.	Uncharacterized protein.	0.629
F7BHT5_CIOIN	F6PIT9_CIOIN	ENSCINP00000026396	ENSCINP00000020211	SERPIN domain-containing protein; Belongs to the serpin family.	Uncharacterized protein.	0.511
H2XLM3_CIOIN	F6PIT9_CIOIN	ENSCINP00000030555	ENSCINP00000020211	Uncharacterized protein.	Uncharacterized protein.	0.535
H2XWS8_CIOIN	F6PIT9_CIOIN	ENSCINP00000034112	ENSCINP00000020211	Uncharacterized protein.	Uncharacterized protein.	0.519
LOC100179396	F6PIT9_CIOIN	ENSCINP00000006408	ENSCINP00000020211	Integrin beta.	Uncharacterized protein.	0.535
LOC100179396	LOC100182403	ENSCINP00000006408	ENSCINP00000001591	Integrin beta.	Integrin_alpha2 domain-containing protein; Belongs to the integrin alpha chain family.	0.605
LOC100182351	F6PIT9_CIOIN	ENSCINP00000004457	ENSCINP00000020211	Plasminogen-like; Belongs to the peptidase S1 family.	Uncharacterized protein.	0.629