STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F6R384_CIOINUncharacterized protein. (240 aa)    
Predicted Functional Partners:
LOC100182572
Bystin-like.
   
 0.964
LOC100184614
Uncharacterized protein.
   
 
 0.925
ppan
Brix domain-containing protein.
   
    0.923
LOC100187123
Uncharacterized protein.
   
 
 0.921
LOC100179273
Sas10 domain-containing protein.
   
   0.917
LOC100180054
U3 small nucleolar RNA-associated protein 4 homolog.
   
 0.915
LOC100181824
Bms1-type G domain-containing protein.
   
 0.902
H2XXU4_CIOIN
Uncharacterized protein.
   
 
 0.897
H2XZG0_CIOIN
Uncharacterized protein.
   
 
 0.893
LOC100179066
Pumilio homolog 3 isoform X3.
   
  
 0.880
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.