STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Q4H3C1_CIOINIkappaB kinase. (172 aa)    
Predicted Functional Partners:
F6S4F7_CIOIN
Non-specific serine/threonine protein kinase.
   
 0.980
F6WVT9_CIOIN
Protein kinase domain-containing protein.
    
 
0.938
Foxo
Fork-head domain-containing protein.
    
 0.932
F6ZAD3_CIOIN
Rap-GAP domain-containing protein.
   
 0.930
LOC100182434
Uncharacterized protein.
   
 0.924
Q1RPY5_CIOIN
Zinc finger protein.
   
 0.866
F6VM15_CIOIN
RanBP2-type domain-containing protein.
    
 0.836
rel1
Rel1 protein isoform X1.
    
 0.826
nfkbp105
Uncharacterized protein.
   
 0.792
LOC778910
ANK_REP_REGION domain-containing protein.
    
 0.767
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.