STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F7AWP0_CIOINUncharacterized protein; Belongs to the Orn/Lys/Arg decarboxylase class-II family. (378 aa)    
Predicted Functional Partners:
LOC100176863
PABS domain-containing protein; Belongs to the spermidine/spermine synthase family.
  
 0.949
F6X5U2_CIOIN
Arginase.
  
 
 0.946
F6Z7L9_CIOIN
Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
    
 0.943
F6Y9G9_CIOIN
Uncharacterized protein; Belongs to the arginase family.
  
 
 0.943
F7ADG5_CIOIN
Uncharacterized protein; Belongs to the arginase family.
  
 
 0.943
LOC100178309
Diamine acetyltransferase 2.
    
 0.913
LOC100184038
Ornithine decarboxylase antizyme.
    
 0.864
F6UET6_CIOIN
Delta-1-pyrroline-5-carboxylate synthase; In the C-terminal section; belongs to the gamma-glutamyl phosphate reductase family.
     
 0.660
F6WYU2_CIOIN
PABS domain-containing protein.
  
 0.497
LOC100183684
Tyrosine aminotransferase; Transaminase involved in tyrosine breakdown. Converts tyrosine to p-hydroxyphenylpyruvate.
  
 
 0.481
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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