STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VspUncharacterized protein. (570 aa)    
Predicted Functional Partners:
H2XPK8_CIOIN
SprT-like domain-containing protein.
   
    0.839
F6S4F7_CIOIN
Non-specific serine/threonine protein kinase.
    
 0.717
F6YGJ7_CIOIN
Uncharacterized protein; Belongs to the peptidase C19 family.
   
 0.704
Foxo
Fork-head domain-containing protein.
    
 0.652
H2XX74_CIOIN
OTU domain-containing protein.
    
 0.601
F7BGT4_CIOIN
E3 ubiquitin-protein ligase.
   
 0.597
F6PPP8_CIOIN
E3 ubiquitin-protein ligase.
    
 0.588
F6PIR1_CIOIN
USP domain-containing protein; Belongs to the peptidase C19 family.
   
 0.581
hvcn1
Voltage-gated hydrogen channel 1; Mediates the voltage-dependent proton permeability of excitable membranes. Forms a proton-selective channel through which protons may pass in accordance with their electrochemical gradient (By similarity).
   
  
 0.581
LOC778651
Tyrosine-protein kinase receptor.
    
 0.575
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.