STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100179887Uncharacterized protein. (471 aa)    
Predicted Functional Partners:
F6Q4W5_CIOIN
PLAT domain-containing protein.
  
  
0.912
LOC100187260
2-acylglycerol O-acyltransferase 1.
     
 0.907
F6SWC9_CIOIN
Lipase domain-containing protein.
  
  
 
0.907
F7AYZ1_CIOIN
Uncharacterized protein; Belongs to the membrane-bound acyltransferase family.
     
 0.904
H2XUU1_CIOIN
Uncharacterized protein.
    
  0.904
LOC100177985
Phospholipid phosphatase 1 isoform X1.
    
  0.904
F6VDV2_CIOIN
SAM domain-containing protein.
     
 0.900
F7A2Q0_CIOIN
Hydrolase_4 domain-containing protein.
     
  0.900
F6QX80_CIOIN
DAGKc domain-containing protein.
     
  0.900
F6R2F1_CIOIN
Hydrolase_4 domain-containing protein.
     
  0.900
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.