STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F7AL38_CIOINDDHD domain-containing protein. (640 aa)    
Predicted Functional Partners:
F6YIU2_CIOIN
WD_REPEATS_REGION domain-containing protein.
    
 0.677
LOC100182407
Protein SEC13 homolog; Belongs to the WD repeat SEC13 family.
    
 0.668
LOC100177711
DDHD domain-containing protein.
   
 
0.660
LOC100183335
Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.
   
 0.641
F6RHH3_CIOIN
Uncharacterized protein.
     
 0.597
H2XU17_CIOIN
Longin domain-containing protein.
     
 0.562
LOC100187163
Ankyrin repeat domain-containing protein 40-like.
    
 0.548
LOC100177836
Thioredoxin domain-containing protein 16-like.
      
 0.531
H2XU55_CIOIN
VWFA domain-containing protein.
   
 0.515
F6XHQ2_CIOIN
Uncharacterized protein.
   
 
 0.506
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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