STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F6XD48_CIOINUncharacterized protein. (547 aa)    
Predicted Functional Partners:
F6R9V2_CIOIN
EF-hand domain-containing protein.
   
 0.503
F6R9M9_CIOIN
EF-hand domain-containing protein.
   
 0.503
F6R9G4_CIOIN
EF-hand domain-containing protein.
   
 0.503
F6R955_CIOIN
Uncharacterized protein.
   
 0.503
LOC100185771
Tropomyosin, smooth muscle/fibroblast CTM1; The function of tropomyosin in smooth muscle and non-muscle cells is not clear; Belongs to the tropomyosin family.
   
 0.462
LOC100175596
Tropomyosin alpha-3 chain.
   
 0.462
F6TMF3_CIOIN
Uncharacterized protein.
   
 0.462
H2XXE5_CIOIN
Uncharacterized protein.
   
 0.462
LOC100180062
Myosin regulatory light chain, smooth muscle-like.
   
 0.452
LOC100177714
Myosin regulatory light chain, smooth muscle isoform X3.
   
 0.452
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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