STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100179352ATP synthase mitochondrial F1 complex assembly factor 2-like. (272 aa)    
Predicted Functional Partners:
LOC104265750
ATP synthase mitochondrial F1 complex assembly factor 1-like.
   
 
 0.747
LOC100177133
ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.
    
 
 0.723
ciatpsyna
ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.
    
 
 0.588
F6RR11_CIOIN
ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.
    
 
 0.588
F6XD08_CIOIN
ANK_REP_REGION domain-containing protein.
    
 
 0.574
LOC100181042
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
   
 
 0.559
H2XN70_CIOIN
Uncharacterized protein.
   
  
 0.553
Q8HIN8_CIOIN
ATP synthase subunit a.
      
 0.538
F6RE18_CIOIN
ATP synthase subunit gamma.
      
 0.508
H2XL44_CIOIN
AA_TRNA_LIGASE_II domain-containing protein.
   
  
 0.497
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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