STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F6V198_CIOINSerine--pyruvate aminotransferase. (353 aa)    
Predicted Functional Partners:
H2XWI3_CIOIN
Beta_elim_lyase domain-containing protein.
    
 0.822
LOC100178245
Uncharacterized protein.
   
 0.797
LOC100183164
Uncharacterized protein.
  
 
 0.790
F7B8G2_CIOIN
TPR_REGION domain-containing protein.
    
 0.777
LOC100186144
Fe-ADH domain-containing protein.
    
 0.727
LOC100181103
Uncharacterized protein LOC100181103.
    
 0.721
F6YYN7_CIOIN
Uncharacterized protein.
 
     0.712
F7A2X8_CIOIN
Trifunctional purine biosynthetic protein adenosine-3; In the C-terminal section; belongs to the GART family. In the central section; belongs to the AIR synthase family.
  
  
 0.692
F6Z761_CIOIN
Uncharacterized protein.
   
  0.687
LOC100176513
Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.
  
 0.649
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.