STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F6Q301_CIOINUncharacterized protein. (237 aa)    
Predicted Functional Partners:
LOC100175803
Uncharacterized protein; Belongs to the FPP/GGPP synthase family.
  
 
 0.970
LOC113474070
Uncharacterized protein; Belongs to the FPP/GGPP synthase family.
  
 
 0.970
F6QHP8_CIOIN
Uncharacterized protein; Belongs to the FPP/GGPP synthase family.
  
 
 0.970
H2XV19_CIOIN
RRF domain-containing protein.
  
  
 0.918
F6SSS9_CIOIN
Nudix hydrolase domain-containing protein.
  
 
 0.896
F6XNG1_CIOIN
Uncharacterized protein.
  
  
 0.851
F6T8P3_CIOIN
Uncharacterized protein.
  
  
 0.822
LOC100178794
Uncharacterized protein.
    
 0.806
H2Y1A2_CIOIN
Uncharacterized protein.
    
 0.806
LOC100179012
Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.
  
  
 0.797
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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